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  "Title": "Simulating Phylogenetic Trees under General Bellman Harris and\nLineage Shift Model",
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  "Date": "2020-03-04",
  "Author": "Oskar Hagen, Tanja Stadler",
  "Maintainer": "Oskar Hagen <oskar.hagen@outlook.com>",
  "Description": "Provides a flexible simulation tool for phylogenetic trees\nunder a general model for speciation and extinction. Trees with\na user-specified number of extant tips, or a user-specified\nstem age are simulated. It is possible to assume any\nprobability distribution for the waiting time until speciation\nand extinction. Furthermore, the waiting times to speciation /\nextinction may be scaled in different parts of the tree,\nmeaning we can simulate trees with clade-dependent\ndiversification processes. At a speciation event, one species\nsplits into two. We allow for two different modes at these\nsplits: (i) symmetric, where for every speciation event new\nwaiting times until speciation and extinction are drawn for\nboth daughter lineages; and (ii) asymmetric, where a speciation\nevent results in one species with new waiting times, and\nanother that carries the extinction time and age of its\nancestor. The symmetric mode can be seen as an vicariant or\nallopatric process where divided populations suffer equal\nevolutionary forces while the asymmetric mode could be seen as\na peripatric speciation where a mother lineage continues to\nexist.  Reference: O. Hagen and T. Stadler (2017). TreeSimGM:\nSimulating phylogenetic trees under general Bellman Harris\nmodels with lineage-specific shifts of speciation and\nextinction in R. Methods in Ecology and Evolution.\n<doi:10.1111/2041-210X.12917>.",
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